noone@mail.com Analysis of Dieting study 16S data % Fri Sep 7 05:46:18 2018

(1.6.1.3.5) Plots of Abundance.

Plots are shown with relation to various combinations of meta data variables and in different graphical representations. Lots of plots here.

(1.6.1.3.5.2) Iterating over all combinations of grouping variables
(1.6.1.3.5.2.1) Grouping variables visit,Drug.Before.Diet
(1.6.1.3.5.2.2) Iterating over Abundance. profile sorting order
(1.6.1.3.5.2.2.1) Abundance. profile sorting order: average abundance
(1.6.1.3.5.2.2.2) Iterating over dodged vs faceted bars

The same data are shown in multiple combinations of graphical representations. This is the same data, but each plot highlights slightly different aspects of it. It is not likely that you will need every plot - pick only what you need.

(1.6.1.3.5.2.2.2.1) faceted plots. Iterating over orientation and, optionally, scaling
(1.6.1.3.5.2.2.2.1.1) Abundance. Plot is in original orientation, Y axis SQRT scaled. Iterating over plot geometry

(1.6.1.3.5.2.2.2.1.1.0) Table 400. Data table used for plots. Data grouped by visit,Drug.Before.Diet. Showing only 200 first rows. Full dataset is also saved in a delimited text file (click to download and open e.g. in Excel) data/1.6.1.3.5.2.2.2.1.1.0-32361f50f2d.1.6.1.3.5.2.2.2.1.1.csv

.record.id visit Drug.Before.Diet feature Abundance
SM1 1 DrugBefore_YES Bacteroides 7.735e-01
SM10 3 DrugBefore_YES Bacteroides 2.364e-01
SM100 4 DrugBefore_YES Bacteroides 5.420e-01
SM11 2 DrugBefore_YES Bacteroides 8.578e-01
SM12 1 DrugBefore_YES Bacteroides 8.674e-01
SM13 1 DrugBefore_NO Bacteroides 4.295e-01
SM14 1 DrugBefore_NO Bacteroides 3.976e-02
SM16 4 DrugBefore_NO Bacteroides 3.890e-01
SM17 1 DrugBefore_YES Bacteroides 8.130e-01
SM18 2 DrugBefore_NO Bacteroides 6.537e-01
SM19 2 DrugBefore_NO Bacteroides 2.221e-01
SM2 1 DrugBefore_NO Bacteroides 8.611e-01
SM21 1 DrugBefore_NO Bacteroides 4.490e-01
SM22 1 DrugBefore_YES Bacteroides 5.831e-01
SM23 2 DrugBefore_YES Bacteroides 2.796e-01
SM24 1 DrugBefore_NO Bacteroides 1.435e-01
SM25 4 DrugBefore_NO Bacteroides 4.520e-01
SM29 3 DrugBefore_YES Bacteroides 9.002e-01
SM3 2 DrugBefore_YES Bacteroides 2.542e-01
SM30 4 DrugBefore_YES Bacteroides 6.581e-02
SM33 1 DrugBefore_YES Bacteroides 1.747e-01
SM36 4 DrugBefore_NO Bacteroides 3.219e-04
SM38 2 DrugBefore_YES Bacteroides 9.828e-01
SM39 1 DrugBefore_NO Bacteroides 4.095e-01
SM40 4 DrugBefore_NO Bacteroides 6.908e-01
SM41 1 DrugBefore_YES Bacteroides 5.037e-01
SM42 4 DrugBefore_NO Bacteroides 6.901e-01
SM43 4 DrugBefore_YES Bacteroides 6.589e-01
SM45 2 DrugBefore_NO Bacteroides 0.000e+00
SM49 1 DrugBefore_YES Bacteroides 9.292e-01
SM5 3 DrugBefore_YES Bacteroides 5.313e-01
SM50 3 DrugBefore_NO Bacteroides 0.000e+00
SM51 4 DrugBefore_YES Bacteroides 7.122e-01
SM52 1 DrugBefore_NO Bacteroides 8.105e-02
SM53 2 DrugBefore_YES Bacteroides 3.305e-01
SM54 3 DrugBefore_YES Bacteroides 6.239e-01
SM56 2 DrugBefore_YES Bacteroides 1.958e-02
SM57 1 DrugBefore_YES Bacteroides 8.679e-01
SM58 2 DrugBefore_NO Bacteroides 2.592e-02
SM59 3 DrugBefore_NO Bacteroides 5.206e-02
SM60 3 DrugBefore_YES Bacteroides 8.428e-01
SM62 1 DrugBefore_YES Bacteroides 9.643e-01
SM64 2 DrugBefore_YES Bacteroides 6.977e-01
SM65 3 DrugBefore_YES Bacteroides 3.711e-01
SM67 4 DrugBefore_YES Bacteroides 5.778e-01
SM68 4 DrugBefore_NO Bacteroides 1.440e-01
SM69 4 DrugBefore_YES Bacteroides 8.051e-01
SM71 3 DrugBefore_YES Bacteroides 8.388e-01
SM73 1 DrugBefore_NO Bacteroides 8.108e-01
SM75 3 DrugBefore_NO Bacteroides 2.377e-03
SM77 2 DrugBefore_YES Bacteroides 7.039e-01
SM79 2 DrugBefore_NO Bacteroides 1.173e-01
SM8 1 DrugBefore_NO Bacteroides 7.723e-01
SM82 4 DrugBefore_YES Bacteroides 8.624e-01
SM83 1 DrugBefore_YES Bacteroides 8.199e-01
SM84 1 DrugBefore_YES Bacteroides 2.885e-01
SM86 2 DrugBefore_YES Bacteroides 2.482e-03
SM87 1 DrugBefore_YES Bacteroides 5.438e-01
SM88 2 DrugBefore_YES Bacteroides 7.940e-01
SM9 2 DrugBefore_NO Bacteroides 6.096e-01
SM90 2 DrugBefore_NO Bacteroides 4.088e-01
SM91 3 DrugBefore_YES Bacteroides 6.525e-01
SM92 3 DrugBefore_NO Bacteroides 7.921e-01
SM93 1 DrugBefore_YES Bacteroides 6.404e-01
SM96 1 DrugBefore_NO Bacteroides 6.375e-01
SM98 3 DrugBefore_NO Bacteroides 2.848e-01
SM99 3 DrugBefore_NO Bacteroides 6.503e-01
SM1 1 DrugBefore_YES Prevotella 2.598e-04
SM10 3 DrugBefore_YES Prevotella 0.000e+00
SM100 4 DrugBefore_YES Prevotella 7.692e-05
SM11 2 DrugBefore_YES Prevotella 3.477e-04
SM12 1 DrugBefore_YES Prevotella 1.328e-04
SM13 1 DrugBefore_NO Prevotella 1.652e-02
SM14 1 DrugBefore_NO Prevotella 1.855e-02
SM16 4 DrugBefore_NO Prevotella 0.000e+00
SM17 1 DrugBefore_YES Prevotella 4.137e-04
SM18 2 DrugBefore_NO Prevotella 3.357e-04
SM19 2 DrugBefore_NO Prevotella 2.314e-03
SM2 1 DrugBefore_NO Prevotella 2.480e-04
SM21 1 DrugBefore_NO Prevotella 0.000e+00
SM22 1 DrugBefore_YES Prevotella 0.000e+00
SM23 2 DrugBefore_YES Prevotella 0.000e+00
SM24 1 DrugBefore_NO Prevotella 6.822e-01
SM25 4 DrugBefore_NO Prevotella 0.000e+00
SM29 3 DrugBefore_YES Prevotella 0.000e+00
SM3 2 DrugBefore_YES Prevotella 4.458e-02
SM30 4 DrugBefore_YES Prevotella 2.762e-03
SM33 1 DrugBefore_YES Prevotella 0.000e+00
SM36 4 DrugBefore_NO Prevotella 0.000e+00
SM38 2 DrugBefore_YES Prevotella 1.028e-04
SM39 1 DrugBefore_NO Prevotella 4.073e-01
SM40 4 DrugBefore_NO Prevotella 2.775e-04
SM41 1 DrugBefore_YES Prevotella 0.000e+00
SM42 4 DrugBefore_NO Prevotella 4.994e-04
SM43 4 DrugBefore_YES Prevotella 7.452e-05
SM45 2 DrugBefore_NO Prevotella 0.000e+00
SM49 1 DrugBefore_YES Prevotella 0.000e+00
SM5 3 DrugBefore_YES Prevotella 5.950e-02
SM50 3 DrugBefore_NO Prevotella 0.000e+00
SM51 4 DrugBefore_YES Prevotella 2.231e-04
SM52 1 DrugBefore_NO Prevotella 8.062e-03
SM53 2 DrugBefore_YES Prevotella 4.611e-01
SM54 3 DrugBefore_YES Prevotella 0.000e+00
SM56 2 DrugBefore_YES Prevotella 0.000e+00
SM57 1 DrugBefore_YES Prevotella 3.600e-04
SM58 2 DrugBefore_NO Prevotella 6.582e-01
SM59 3 DrugBefore_NO Prevotella 0.000e+00
SM60 3 DrugBefore_YES Prevotella 3.404e-04
SM62 1 DrugBefore_YES Prevotella 0.000e+00
SM64 2 DrugBefore_YES Prevotella 1.113e-04
SM65 3 DrugBefore_YES Prevotella 1.374e-04
SM67 4 DrugBefore_YES Prevotella 0.000e+00
SM68 4 DrugBefore_NO Prevotella 2.586e-02
SM69 4 DrugBefore_YES Prevotella 3.108e-04
SM71 3 DrugBefore_YES Prevotella 1.723e-03
SM73 1 DrugBefore_NO Prevotella 1.009e-04
SM75 3 DrugBefore_NO Prevotella 0.000e+00
SM77 2 DrugBefore_YES Prevotella 1.127e-04
SM79 2 DrugBefore_NO Prevotella 6.782e-01
SM8 1 DrugBefore_NO Prevotella 7.416e-04
SM82 4 DrugBefore_YES Prevotella 2.141e-04
SM83 1 DrugBefore_YES Prevotella 0.000e+00
SM84 1 DrugBefore_YES Prevotella 4.502e-01
SM86 2 DrugBefore_YES Prevotella 3.103e-04
SM87 1 DrugBefore_YES Prevotella 1.804e-01
SM88 2 DrugBefore_YES Prevotella 1.705e-04
SM9 2 DrugBefore_NO Prevotella 8.227e-04
SM90 2 DrugBefore_NO Prevotella 5.776e-03
SM91 3 DrugBefore_YES Prevotella 2.212e-04
SM92 3 DrugBefore_NO Prevotella 9.411e-02
SM93 1 DrugBefore_YES Prevotella 0.000e+00
SM96 1 DrugBefore_NO Prevotella 0.000e+00
SM98 3 DrugBefore_NO Prevotella 5.140e-01
SM99 3 DrugBefore_NO Prevotella 4.757e-04
SM1 1 DrugBefore_YES Unclassified_Lachnospiraceae 4.529e-02
SM10 3 DrugBefore_YES Unclassified_Lachnospiraceae 2.607e-01
SM100 4 DrugBefore_YES Unclassified_Lachnospiraceae 1.308e-01
SM11 2 DrugBefore_YES Unclassified_Lachnospiraceae 4.404e-03
SM12 1 DrugBefore_YES Unclassified_Lachnospiraceae 1.049e-02
SM13 1 DrugBefore_NO Unclassified_Lachnospiraceae 1.116e-02
SM14 1 DrugBefore_NO Unclassified_Lachnospiraceae 6.172e-02
SM16 4 DrugBefore_NO Unclassified_Lachnospiraceae 1.583e-01
SM17 1 DrugBefore_YES Unclassified_Lachnospiraceae 2.938e-02
SM18 2 DrugBefore_NO Unclassified_Lachnospiraceae 5.271e-02
SM19 2 DrugBefore_NO Unclassified_Lachnospiraceae 1.055e-01
SM2 1 DrugBefore_NO Unclassified_Lachnospiraceae 1.097e-02
SM21 1 DrugBefore_NO Unclassified_Lachnospiraceae 5.532e-02
SM22 1 DrugBefore_YES Unclassified_Lachnospiraceae 1.113e-01
SM23 2 DrugBefore_YES Unclassified_Lachnospiraceae 4.148e-04
SM24 1 DrugBefore_NO Unclassified_Lachnospiraceae 1.402e-02
SM25 4 DrugBefore_NO Unclassified_Lachnospiraceae 8.430e-02
SM29 3 DrugBefore_YES Unclassified_Lachnospiraceae 1.128e-02
SM3 2 DrugBefore_YES Unclassified_Lachnospiraceae 1.560e-01
SM30 4 DrugBefore_YES Unclassified_Lachnospiraceae 3.297e-01
SM33 1 DrugBefore_YES Unclassified_Lachnospiraceae 3.934e-03
SM36 4 DrugBefore_NO Unclassified_Lachnospiraceae 1.023e-01
SM38 2 DrugBefore_YES Unclassified_Lachnospiraceae 1.130e-03
SM39 1 DrugBefore_NO Unclassified_Lachnospiraceae 1.135e-02
SM40 4 DrugBefore_NO Unclassified_Lachnospiraceae 4.930e-02
SM41 1 DrugBefore_YES Unclassified_Lachnospiraceae 2.995e-02
SM42 4 DrugBefore_NO Unclassified_Lachnospiraceae 5.327e-02
SM43 4 DrugBefore_YES Unclassified_Lachnospiraceae 3.264e-02
SM45 2 DrugBefore_NO Unclassified_Lachnospiraceae 0.000e+00
SM49 1 DrugBefore_YES Unclassified_Lachnospiraceae 6.331e-03
SM5 3 DrugBefore_YES Unclassified_Lachnospiraceae 2.178e-02
SM50 3 DrugBefore_NO Unclassified_Lachnospiraceae 3.918e-02
SM51 4 DrugBefore_YES Unclassified_Lachnospiraceae 3.993e-02
SM52 1 DrugBefore_NO Unclassified_Lachnospiraceae 9.925e-02
SM53 2 DrugBefore_YES Unclassified_Lachnospiraceae 5.682e-02
SM54 3 DrugBefore_YES Unclassified_Lachnospiraceae 5.786e-02
SM56 2 DrugBefore_YES Unclassified_Lachnospiraceae 3.916e-02
SM57 1 DrugBefore_YES Unclassified_Lachnospiraceae 3.240e-03
SM58 2 DrugBefore_NO Unclassified_Lachnospiraceae 1.895e-02
SM59 3 DrugBefore_NO Unclassified_Lachnospiraceae 2.981e-01
SM60 3 DrugBefore_YES Unclassified_Lachnospiraceae 1.361e-02
SM62 1 DrugBefore_YES Unclassified_Lachnospiraceae 1.204e-03
SM64 2 DrugBefore_YES Unclassified_Lachnospiraceae 1.019e-02
SM65 3 DrugBefore_YES Unclassified_Lachnospiraceae 1.502e-01
SM67 4 DrugBefore_YES Unclassified_Lachnospiraceae 3.912e-02
SM68 4 DrugBefore_NO Unclassified_Lachnospiraceae 1.044e-01
SM69 4 DrugBefore_YES Unclassified_Lachnospiraceae 1.710e-03
SM71 3 DrugBefore_YES Unclassified_Lachnospiraceae 5.249e-03
SM73 1 DrugBefore_NO Unclassified_Lachnospiraceae 8.278e-03
SM75 3 DrugBefore_NO Unclassified_Lachnospiraceae 3.718e-01
SM77 2 DrugBefore_YES Unclassified_Lachnospiraceae 4.799e-02
SM79 2 DrugBefore_NO Unclassified_Lachnospiraceae 2.075e-02
SM8 1 DrugBefore_NO Unclassified_Lachnospiraceae 1.112e-02
SM82 4 DrugBefore_YES Unclassified_Lachnospiraceae 5.168e-03
SM83 1 DrugBefore_YES Unclassified_Lachnospiraceae 3.899e-02
SM84 1 DrugBefore_YES Unclassified_Lachnospiraceae 1.844e-03
SM86 2 DrugBefore_YES Unclassified_Lachnospiraceae 2.203e-01
SM87 1 DrugBefore_YES Unclassified_Lachnospiraceae 0.000e+00
SM88 2 DrugBefore_YES Unclassified_Lachnospiraceae 2.660e-02
SM9 2 DrugBefore_NO Unclassified_Lachnospiraceae 1.275e-02
SM90 2 DrugBefore_NO Unclassified_Lachnospiraceae 3.795e-02
SM91 3 DrugBefore_YES Unclassified_Lachnospiraceae 6.525e-02
SM92 3 DrugBefore_NO Unclassified_Lachnospiraceae 3.871e-02
SM93 1 DrugBefore_YES Unclassified_Lachnospiraceae 6.495e-02
SM96 1 DrugBefore_NO Unclassified_Lachnospiraceae 4.444e-02
SM98 3 DrugBefore_NO Unclassified_Lachnospiraceae 1.239e-02

(1.6.1.3.5.2.2.2.1.1.1) Widget 414. Dynamic Pivot Table link (drag and drop field names and pick averaging functions or plot types; click on fields or legend elements to filter values). Starting rendering is Stacked Bar Chart. Data grouped by visit,Drug.Before.Diet. Click to see HTML widget file in full window: ./1.6.1.3.5.2.2.2.1.1.1-3235aa77a63Dynamic.Pivot.Table.html

(1.6.1.3.5.2.2.2.1.1.1) Widget 415. Dynamic Pivot Table link (drag and drop field names and pick averaging functions or plot types; click on fields or legend elements to filter values). Starting rendering is Table Barchart. Data grouped by visit,Drug.Before.Diet. Click to see HTML widget file in full window: ./1.6.1.3.5.2.2.2.1.1.1-323e06f298Dynamic.Pivot.Table.html

(1.6.1.3.5.2.2.2.1.1.1) Table 401. Summary table. Data grouped by visit,Drug.Before.Diet. Showing only 200 first rows. Full dataset is also saved in a delimited text file (click to download and open e.g. in Excel) data/1.6.1.3.5.2.2.2.1.1.1-32314348468.1.6.1.3.5.2.2.2.1.1.csv

feature visit Drug.Before.Diet mean sd median incidence
Bacteroides 1 DrugBefore_NO 4.634e-01 3.049e-01 4.392e-01 1.00000
Bacteroides 1 DrugBefore_YES 6.746e-01 2.463e-01 7.735e-01 1.00000
Bacteroides 2 DrugBefore_NO 2.911e-01 2.698e-01 2.221e-01 0.85714
Bacteroides 2 DrugBefore_YES 4.923e-01 3.565e-01 5.141e-01 1.00000
Bacteroides 3 DrugBefore_NO 2.969e-01 3.479e-01 1.684e-01 0.83333
Bacteroides 3 DrugBefore_YES 6.246e-01 2.372e-01 6.382e-01 1.00000
Bacteroides 4 DrugBefore_NO 3.944e-01 2.816e-01 4.205e-01 1.00000
Bacteroides 4 DrugBefore_YES 6.035e-01 2.634e-01 6.589e-01 1.00000
Prevotella 1 DrugBefore_NO 1.134e-01 2.365e-01 4.402e-03 0.80000
Prevotella 1 DrugBefore_YES 4.860e-02 1.305e-01 0.000e+00 0.46154
Prevotella 2 DrugBefore_NO 1.922e-01 3.252e-01 2.314e-03 0.85714
Prevotella 2 DrugBefore_YES 5.068e-02 1.449e-01 1.416e-04 0.80000
Prevotella 3 DrugBefore_NO 1.014e-01 2.056e-01 2.378e-04 0.50000
Prevotella 3 DrugBefore_YES 7.740e-03 2.092e-02 1.793e-04 0.62500
Prevotella 4 DrugBefore_NO 4.440e-03 1.050e-02 1.387e-04 0.50000
Prevotella 4 DrugBefore_YES 5.231e-04 9.932e-04 2.141e-04 0.85714
Unclassified_Lachnospiraceae 1 DrugBefore_NO 3.276e-02 3.113e-02 1.269e-02 1.00000
Unclassified_Lachnospiraceae 1 DrugBefore_YES 2.669e-02 3.274e-02 1.049e-02 0.92308
Unclassified_Lachnospiraceae 2 DrugBefore_NO 3.552e-02 3.529e-02 2.075e-02 0.85714
Unclassified_Lachnospiraceae 2 DrugBefore_YES 5.630e-02 7.384e-02 3.288e-02 1.00000
Unclassified_Lachnospiraceae 3 DrugBefore_NO 1.344e-01 1.575e-01 4.278e-02 1.00000
Unclassified_Lachnospiraceae 3 DrugBefore_YES 7.323e-02 8.946e-02 3.982e-02 1.00000
Unclassified_Lachnospiraceae 4 DrugBefore_NO 9.198e-02 4.009e-02 9.333e-02 1.00000
Unclassified_Lachnospiraceae 4 DrugBefore_YES 8.273e-02 1.170e-01 3.912e-02 1.00000
Faecalibacterium 1 DrugBefore_NO 3.876e-02 4.038e-02 2.495e-02 1.00000
Faecalibacterium 1 DrugBefore_YES 1.846e-02 1.438e-02 1.267e-02 0.92308
Faecalibacterium 2 DrugBefore_NO 7.169e-02 1.285e-01 1.664e-02 0.85714
Faecalibacterium 2 DrugBefore_YES 5.171e-02 1.083e-01 1.129e-02 0.90000
Faecalibacterium 3 DrugBefore_NO 2.433e-02 2.073e-02 1.749e-02 1.00000
Faecalibacterium 3 DrugBefore_YES 4.364e-02 4.948e-02 2.507e-02 1.00000
Faecalibacterium 4 DrugBefore_NO 9.878e-02 9.939e-02 6.677e-02 1.00000
Faecalibacterium 4 DrugBefore_YES 3.871e-02 4.144e-02 1.950e-02 1.00000
Parabacteroides 1 DrugBefore_NO 1.024e-02 1.289e-02 2.166e-03 0.80000
Parabacteroides 1 DrugBefore_YES 5.820e-02 1.381e-01 7.199e-03 0.69231
Parabacteroides 2 DrugBefore_NO 2.816e-02 5.131e-02 1.370e-03 0.85714
Parabacteroides 2 DrugBefore_YES 7.576e-02 2.222e-01 5.432e-04 0.80000
Parabacteroides 3 DrugBefore_NO 8.124e-03 1.641e-02 0.000e+00 0.33333
Parabacteroides 3 DrugBefore_YES 5.231e-02 7.215e-02 1.782e-02 0.87500
Parabacteroides 4 DrugBefore_NO 2.621e-03 5.406e-03 1.849e-04 0.66667
Parabacteroides 4 DrugBefore_YES 6.228e-02 1.228e-01 2.231e-04 0.71429
Lachnospiracea_incertae_sedis 1 DrugBefore_NO 9.291e-03 8.958e-03 6.378e-03 1.00000
Lachnospiracea_incertae_sedis 1 DrugBefore_YES 1.085e-02 1.317e-02 3.240e-03 0.84615
Lachnospiracea_incertae_sedis 2 DrugBefore_NO 1.942e-02 1.950e-02 1.145e-02 0.85714
Lachnospiracea_incertae_sedis 2 DrugBefore_YES 4.535e-02 5.535e-02 2.253e-02 0.90000
Lachnospiracea_incertae_sedis 3 DrugBefore_NO 7.174e-02 1.013e-01 1.093e-02 1.00000
Lachnospiracea_incertae_sedis 3 DrugBefore_YES 4.177e-02 4.937e-02 2.248e-02 0.87500
Lachnospiracea_incertae_sedis 4 DrugBefore_NO 8.868e-02 6.950e-02 7.666e-02 1.00000
Lachnospiracea_incertae_sedis 4 DrugBefore_YES 2.672e-02 3.288e-02 1.450e-02 0.85714
Alistipes 1 DrugBefore_NO 5.269e-02 7.947e-02 1.928e-02 0.70000
Alistipes 1 DrugBefore_YES 1.696e-02 2.078e-02 9.784e-03 0.69231
Alistipes 2 DrugBefore_NO 1.185e-02 1.874e-02 6.851e-04 0.57143
Alistipes 2 DrugBefore_YES 2.759e-02 5.265e-02 0.000e+00 0.40000
Alistipes 3 DrugBefore_NO 8.739e-04 2.141e-03 0.000e+00 0.16667
Alistipes 3 DrugBefore_YES 1.056e-02 2.049e-02 1.516e-03 0.62500
Alistipes 4 DrugBefore_NO 4.068e-03 8.729e-03 4.160e-04 0.50000
Alistipes 4 DrugBefore_YES 9.648e-03 1.404e-02 2.660e-03 0.57143
Blautia 1 DrugBefore_NO 1.828e-02 2.097e-02 5.935e-03 1.00000
Blautia 1 DrugBefore_YES 7.798e-03 1.057e-02 3.143e-03 0.92308
Blautia 2 DrugBefore_NO 1.872e-02 3.047e-02 2.936e-03 0.85714
Blautia 2 DrugBefore_YES 1.865e-02 3.688e-02 8.351e-03 0.80000
Blautia 3 DrugBefore_NO 3.677e-02 3.608e-02 2.566e-02 1.00000
Blautia 3 DrugBefore_YES 1.381e-02 1.440e-02 9.423e-03 1.00000
Blautia 4 DrugBefore_NO 1.189e-02 8.838e-03 8.247e-03 1.00000
Blautia 4 DrugBefore_YES 1.700e-02 2.588e-02 6.334e-03 1.00000
Roseburia 1 DrugBefore_NO 7.028e-03 7.428e-03 3.183e-03 1.00000
Roseburia 1 DrugBefore_YES 3.915e-03 5.016e-03 2.110e-03 0.76923
Roseburia 2 DrugBefore_NO 1.860e-02 3.406e-02 3.861e-03 0.85714
Roseburia 2 DrugBefore_YES 1.514e-02 1.970e-02 6.342e-03 1.00000
Roseburia 3 DrugBefore_NO 1.395e-02 1.660e-02 9.751e-03 1.00000
Roseburia 3 DrugBefore_YES 1.537e-02 1.691e-02 1.115e-02 1.00000
Roseburia 4 DrugBefore_NO 5.491e-02 4.492e-02 5.431e-02 1.00000
Roseburia 4 DrugBefore_YES 2.036e-02 2.166e-02 2.208e-02 1.00000
Unclassified_Clostridiales 1 DrugBefore_NO 1.711e-02 1.800e-02 8.182e-03 1.00000
Unclassified_Clostridiales 1 DrugBefore_YES 6.632e-03 8.900e-03 6.030e-03 1.00000
Unclassified_Clostridiales 2 DrugBefore_NO 1.125e-02 1.229e-02 8.058e-03 0.85714
Unclassified_Clostridiales 2 DrugBefore_YES 8.688e-03 1.226e-02 4.161e-03 0.90000
Unclassified_Clostridiales 3 DrugBefore_NO 5.322e-02 9.895e-02 1.471e-02 1.00000
Unclassified_Clostridiales 3 DrugBefore_YES 1.341e-02 1.283e-02 9.805e-03 1.00000
Unclassified_Clostridiales 4 DrugBefore_NO 2.119e-02 2.066e-02 1.448e-02 1.00000
Unclassified_Clostridiales 4 DrugBefore_YES 6.315e-03 5.937e-03 5.354e-03 1.00000
Lactobacillus 1 DrugBefore_NO 8.034e-04 1.696e-03 0.000e+00 0.40000
Lactobacillus 1 DrugBefore_YES 0.000e+00 0.000e+00 0.000e+00 0.00000
Lactobacillus 2 DrugBefore_NO 1.426e-01 3.768e-01 0.000e+00 0.28571
Lactobacillus 2 DrugBefore_YES 1.384e-04 3.240e-04 0.000e+00 0.30000
Lactobacillus 3 DrugBefore_NO 8.881e-04 1.905e-03 2.458e-05 0.50000
Lactobacillus 3 DrugBefore_YES 0.000e+00 0.000e+00 0.000e+00 0.00000
Lactobacillus 4 DrugBefore_NO 1.086e-03 2.200e-03 1.609e-04 0.50000
Lactobacillus 4 DrugBefore_YES 0.000e+00 0.000e+00 0.000e+00 0.00000
Clostridium_XI 1 DrugBefore_NO 3.278e-02 6.673e-02 3.583e-03 0.90000
Clostridium_XI 1 DrugBefore_YES 5.585e-03 1.194e-02 1.655e-03 0.76923
Clostridium_XI 2 DrugBefore_NO 4.192e-03 6.009e-03 2.854e-03 0.57143
Clostridium_XI 2 DrugBefore_YES 1.709e-02 4.566e-02 1.260e-03 0.90000
Clostridium_XI 3 DrugBefore_NO 4.168e-03 5.149e-03 2.607e-03 0.83333
Clostridium_XI 3 DrugBefore_YES 8.726e-03 1.128e-02 2.379e-03 1.00000
Clostridium_XI 4 DrugBefore_NO 3.122e-02 4.815e-02 1.455e-02 1.00000
Clostridium_XI 4 DrugBefore_YES 1.728e-02 2.154e-02 5.589e-03 1.00000
Erysipelotrichaceae_incertae_sedis 1 DrugBefore_NO 4.282e-02 1.209e-01 1.055e-03 0.80000
Erysipelotrichaceae_incertae_sedis 1 DrugBefore_YES 2.576e-03 3.115e-03 1.373e-03 0.69231
Erysipelotrichaceae_incertae_sedis 2 DrugBefore_NO 1.497e-03 2.797e-03 1.957e-04 0.57143
Erysipelotrichaceae_incertae_sedis 2 DrugBefore_YES 1.907e-03 3.034e-03 5.660e-04 1.00000
Erysipelotrichaceae_incertae_sedis 3 DrugBefore_NO 1.465e-02 1.880e-02 6.028e-03 1.00000
Erysipelotrichaceae_incertae_sedis 3 DrugBefore_YES 5.662e-03 8.182e-03 2.557e-03 1.00000
Erysipelotrichaceae_incertae_sedis 4 DrugBefore_NO 3.076e-02 7.402e-02 2.127e-04 0.66667
Erysipelotrichaceae_incertae_sedis 4 DrugBefore_YES 1.908e-03 1.198e-03 2.231e-03 1.00000
Enterococcus 1 DrugBefore_NO 7.389e-03 2.263e-02 5.447e-05 0.50000
Enterococcus 1 DrugBefore_YES 3.162e-04 9.135e-04 0.000e+00 0.23077
Enterococcus 2 DrugBefore_NO 4.235e-04 6.395e-04 0.000e+00 0.42857
Enterococcus 2 DrugBefore_YES 7.148e-02 2.245e-01 0.000e+00 0.40000
Enterococcus 3 DrugBefore_NO 3.121e-04 7.645e-04 0.000e+00 0.16667
Enterococcus 3 DrugBefore_YES 2.586e-04 4.652e-04 0.000e+00 0.37500
Enterococcus 4 DrugBefore_NO 5.194e-05 1.272e-04 0.000e+00 0.16667
Enterococcus 4 DrugBefore_YES 5.191e-04 9.098e-04 0.000e+00 0.28571
Unclassified_Ruminococcaceae 1 DrugBefore_NO 1.774e-02 3.797e-02 5.337e-03 1.00000
Unclassified_Ruminococcaceae 1 DrugBefore_YES 8.291e-03 7.539e-03 6.698e-03 1.00000
Unclassified_Ruminococcaceae 2 DrugBefore_NO 8.976e-03 1.262e-02 3.861e-03 0.85714
Unclassified_Ruminococcaceae 2 DrugBefore_YES 3.945e-03 3.629e-03 2.494e-03 0.90000
Unclassified_Ruminococcaceae 3 DrugBefore_NO 8.313e-03 1.001e-02 4.539e-03 1.00000
Unclassified_Ruminococcaceae 3 DrugBefore_YES 4.088e-03 5.283e-03 2.960e-03 1.00000
Unclassified_Ruminococcaceae 4 DrugBefore_NO 1.269e-02 1.408e-02 7.225e-03 1.00000
Unclassified_Ruminococcaceae 4 DrugBefore_YES 5.241e-03 9.406e-03 2.293e-03 1.00000
Sutterella 1 DrugBefore_NO 5.495e-03 1.166e-02 1.302e-04 0.70000
Sutterella 1 DrugBefore_YES 7.355e-03 1.737e-02 0.000e+00 0.38462
Sutterella 2 DrugBefore_NO 9.702e-03 1.627e-02 0.000e+00 0.42857
Sutterella 2 DrugBefore_YES 5.365e-03 1.176e-02 0.000e+00 0.20000
Sutterella 3 DrugBefore_NO 6.242e-05 1.529e-04 0.000e+00 0.16667
Sutterella 3 DrugBefore_YES 8.784e-03 1.627e-02 0.000e+00 0.25000
Sutterella 4 DrugBefore_NO 1.555e-02 3.337e-02 3.219e-04 0.50000
Sutterella 4 DrugBefore_YES 5.578e-03 1.476e-02 0.000e+00 0.14286
Escherichia_Shigella 1 DrugBefore_NO 1.337e-02 4.052e-02 6.431e-05 0.50000
Escherichia_Shigella 1 DrugBefore_YES 1.466e-02 4.824e-02 0.000e+00 0.30769
Escherichia_Shigella 2 DrugBefore_NO 8.508e-04 2.001e-03 0.000e+00 0.42857
Escherichia_Shigella 2 DrugBefore_YES 1.239e-05 2.833e-05 0.000e+00 0.20000
Escherichia_Shigella 3 DrugBefore_NO 1.739e-03 1.694e-03 1.798e-03 0.66667
Escherichia_Shigella 3 DrugBefore_YES 2.818e-03 6.836e-03 3.157e-04 0.62500
Escherichia_Shigella 4 DrugBefore_NO 2.261e-04 3.197e-04 4.161e-05 0.50000
Escherichia_Shigella 4 DrugBefore_YES 1.381e-02 2.232e-02 1.590e-03 0.57143
Megamonas 1 DrugBefore_NO 1.089e-05 3.445e-05 0.000e+00 0.10000
Megamonas 1 DrugBefore_YES 3.839e-03 1.384e-02 0.000e+00 0.07692
Megamonas 2 DrugBefore_NO 4.764e-02 8.486e-02 0.000e+00 0.28571
Megamonas 2 DrugBefore_YES 0.000e+00 0.000e+00 0.000e+00 0.00000
Megamonas 3 DrugBefore_NO 6.492e-03 1.590e-02 0.000e+00 0.16667
Megamonas 3 DrugBefore_YES 0.000e+00 0.000e+00 0.000e+00 0.00000
Megamonas 4 DrugBefore_NO 4.717e-03 1.156e-02 0.000e+00 0.16667
Megamonas 4 DrugBefore_YES 2.053e-04 5.432e-04 0.000e+00 0.14286
Ruminococcus 1 DrugBefore_NO 4.312e-03 4.547e-03 2.962e-03 1.00000
Ruminococcus 1 DrugBefore_YES 5.840e-03 1.170e-02 1.647e-03 0.84615
Ruminococcus 2 DrugBefore_NO 8.027e-03 1.303e-02 1.175e-03 0.57143
Ruminococcus 2 DrugBefore_YES 2.893e-03 2.465e-03 2.473e-03 0.90000
Ruminococcus 3 DrugBefore_NO 2.267e-02 3.043e-02 1.710e-02 1.00000
Ruminococcus 3 DrugBefore_YES 2.368e-03 2.385e-03 1.529e-03 0.75000
Ruminococcus 4 DrugBefore_NO 1.248e-02 1.947e-02 2.719e-03 0.66667
Ruminococcus 4 DrugBefore_YES 1.994e-03 2.008e-03 1.988e-03 0.85714
Clostridium_XlVa 1 DrugBefore_NO 8.294e-03 1.001e-02 4.344e-03 1.00000
Clostridium_XlVa 1 DrugBefore_YES 4.560e-03 3.747e-03 5.758e-03 0.92308
Clostridium_XlVa 2 DrugBefore_NO 2.031e-03 1.887e-03 1.468e-03 0.85714
Clostridium_XlVa 2 DrugBefore_YES 2.755e-03 3.174e-03 1.854e-03 1.00000
Clostridium_XlVa 3 DrugBefore_NO 1.263e-02 2.282e-02 4.846e-03 1.00000
Clostridium_XlVa 3 DrugBefore_YES 8.112e-03 1.093e-02 2.430e-03 1.00000
Clostridium_XlVa 4 DrugBefore_NO 8.530e-03 4.628e-03 7.489e-03 1.00000
Clostridium_XlVa 4 DrugBefore_YES 6.039e-03 6.604e-03 6.023e-03 0.85714
Haemophilus 1 DrugBefore_NO 1.089e-03 2.532e-03 0.000e+00 0.40000
Haemophilus 1 DrugBefore_YES 1.341e-04 2.383e-04 0.000e+00 0.30769
Haemophilus 2 DrugBefore_NO 1.992e-03 2.366e-03 1.650e-03 0.71429
Haemophilus 2 DrugBefore_YES 8.641e-04 1.785e-03 4.263e-05 0.50000
Haemophilus 3 DrugBefore_NO 1.197e-02 2.109e-02 0.000e+00 0.33333
Haemophilus 3 DrugBefore_YES 3.237e-03 4.779e-03 1.166e-03 0.62500
Haemophilus 4 DrugBefore_NO 1.832e-02 3.967e-02 1.708e-03 0.83333
Haemophilus 4 DrugBefore_YES 2.501e-02 6.550e-02 2.231e-04 0.71429
Unclassified_Bacteroidales 1 DrugBefore_NO 3.923e-03 7.636e-03 1.341e-03 1.00000
Unclassified_Bacteroidales 1 DrugBefore_YES 8.234e-03 1.716e-02 3.015e-03 1.00000
Unclassified_Bacteroidales 2 DrugBefore_NO 1.853e-02 2.981e-02 4.538e-03 0.85714
Unclassified_Bacteroidales 2 DrugBefore_YES 1.919e-03 1.479e-03 1.639e-03 0.90000
Unclassified_Bacteroidales 3 DrugBefore_NO 2.033e-03 4.456e-03 1.873e-04 0.50000
Unclassified_Bacteroidales 3 DrugBefore_YES 3.376e-03 2.782e-03 2.559e-03 0.87500
Unclassified_Bacteroidales 4 DrugBefore_NO 3.144e-04 3.624e-04 2.497e-04 0.50000
Unclassified_Bacteroidales 4 DrugBefore_YES 2.734e-03 2.675e-03 2.008e-03 1.00000
Unclassified_Bacteria 1 DrugBefore_NO 1.480e-02 2.717e-02 4.448e-03 1.00000
Unclassified_Bacteria 1 DrugBefore_YES 3.807e-03 4.164e-03 2.257e-03 0.92308
Unclassified_Bacteria 2 DrugBefore_NO 2.186e-03 2.207e-03 1.388e-03 0.85714
Unclassified_Bacteria 2 DrugBefore_YES 2.145e-03 1.812e-03 2.054e-03 0.90000
Unclassified_Bacteria 3 DrugBefore_NO 5.270e-03 3.824e-03 3.444e-03 1.00000
Unclassified_Bacteria 3 DrugBefore_YES 1.982e-03 1.537e-03 1.345e-03 1.00000
Unclassified_Bacteria 4 DrugBefore_NO 4.114e-03 4.251e-03 2.007e-03 1.00000
Unclassified_Bacteria 4 DrugBefore_YES 5.219e-03 8.370e-03 1.399e-03 1.00000
Unclassified_Firmicutes 1 DrugBefore_NO 2.802e-03 4.001e-03 1.172e-03 1.00000
Unclassified_Firmicutes 1 DrugBefore_YES 2.142e-03 2.989e-03 6.030e-04 0.76923
Unclassified_Firmicutes 2 DrugBefore_NO 1.103e-02 1.266e-02 7.867e-03 0.71429
Unclassified_Firmicutes 2 DrugBefore_YES 1.606e-03 2.074e-03 5.869e-04 0.80000
Unclassified_Firmicutes 3 DrugBefore_NO 1.975e-02 2.478e-02 1.006e-02 1.00000
Unclassified_Firmicutes 3 DrugBefore_YES 1.509e-03 1.271e-03 1.063e-03 1.00000
Unclassified_Firmicutes 4 DrugBefore_NO 7.886e-03 8.479e-03 4.579e-03 1.00000
Unclassified_Firmicutes 4 DrugBefore_YES 9.570e-04 1.257e-03 6.692e-04 0.85714
Clostridium_XVIII 1 DrugBefore_NO 3.441e-03 3.257e-03 1.827e-03 1.00000
Clostridium_XVIII 1 DrugBefore_YES 3.688e-03 4.942e-03 1.574e-03 0.76923
Clostridium_XVIII 2 DrugBefore_NO 2.403e-03 4.827e-03 4.627e-04 0.57143
Clostridium_XVIII 2 DrugBefore_YES 7.396e-04 8.679e-04 4.835e-04 0.90000
Clostridium_XVIII 3 DrugBefore_NO 1.405e-02 2.208e-02 3.803e-03 0.83333
Clostridium_XVIII 3 DrugBefore_YES 1.351e-03 1.370e-03 8.134e-04 0.75000
Clostridium_XVIII 4 DrugBefore_NO 1.249e-02 2.471e-02 2.644e-03 1.00000
Clostridium_XVIII 4 DrugBefore_YES 2.147e-03 3.013e-03 9.230e-04 0.85714

(1.6.1.3.5.2.2.2.1.1.1) Figure 982. Abundance. Data grouped by visit,Drug.Before.Diet. bar_stacked plot. Image file: plots/3236dccfe7b.svg.

(1.6.1.3.5.2.2.2.1.1.1) Figure 983. Abundance. Data grouped by visit,Drug.Before.Diet. bar (sample mean) plot. Image file: plots/3232b07e674.svg.

(1.6.1.3.5.2.2.2.1.1.1) Figure 984. Abundance. Data grouped by visit,Drug.Before.Diet. violin plot. Image file: plots/32340b33d96.svg.

(1.6.1.3.5.2.2.2.1.1.1) Figure 985. Abundance. Data grouped by visit,Drug.Before.Diet. boxplot plot. Image file: plots/32350c0b0b9.svg.

(1.6.1.3.5.2.2.2.1.2) Abundance. Plot is in flipped orientation, Y axis not scaled. Iterating over plot geometry

(1.6.1.3.5.2.2.2.1.2.1) Figure 986. Abundance. Data grouped by visit,Drug.Before.Diet. bar (sample mean) plot. Image file: plots/323259510d.svg.

(1.6.1.3.5.2.2.2.1.2.1) Figure 987. Abundance. Data grouped by visit,Drug.Before.Diet. violin plot. Image file: plots/3235053f18a.svg.

(1.6.1.3.5.2.2.2.1.2.1) Figure 988. Abundance. Data grouped by visit,Drug.Before.Diet. boxplot plot. Image file: plots/3233378756a.svg.

(1.6.1.3.5.2.2.2.2) dodged plots. Iterating over orientation and, optionally, scaling
(1.6.1.3.5.2.2.2.2.1) Abundance. Plot is in original orientation, Y axis SQRT scaled. Iterating over plot geometry

(1.6.1.3.5.2.2.2.2.1.1) Figure 989. Abundance. Data grouped by visit,Drug.Before.Diet. bar (sample mean) plot. Image file: plots/323636d3da2.svg.

(1.6.1.3.5.2.2.2.2.1.1) Figure 990. Abundance. Data grouped by visit,Drug.Before.Diet. violin plot. Image file: plots/3235eab765a.svg.

(1.6.1.3.5.2.2.2.2.1.1) Figure 991. Abundance. Data grouped by visit,Drug.Before.Diet. boxplot plot. Image file: plots/32333a2c637.svg.

(1.6.1.3.5.2.2.2.2.2) Abundance. Plot is in flipped orientation, Y axis not scaled. Iterating over plot geometry

(1.6.1.3.5.2.2.2.2.2.1) Figure 992. Abundance. Data grouped by visit,Drug.Before.Diet. bar (sample mean) plot. Image file: plots/323199f52e7.svg.

(1.6.1.3.5.2.2.2.2.2.1) Figure 993. Abundance. Data grouped by visit,Drug.Before.Diet. violin plot. Image file: plots/32317e3f508.svg.

(1.6.1.3.5.2.2.2.2.2.1) Figure 994. Abundance. Data grouped by visit,Drug.Before.Diet. boxplot plot. Image file: plots/3237277aca6.svg.

(1.6.1.3.5.2.2.3) Abundance. profile sorting order: Ranking by 'stabsel' method
(1.6.1.3.5.2.2.4) Iterating over dodged vs faceted bars

The same data are shown in multiple combinations of graphical representations. This is the same data, but each plot highlights slightly different aspects of it. It is not likely that you will need every plot - pick only what you need.

(1.6.1.3.5.2.2.4.1) faceted plots. Iterating over orientation and, optionally, scaling
(1.6.1.3.5.2.2.4.1.1) Abundance. Plot is in original orientation, Y axis SQRT scaled. Iterating over plot geometry

(1.6.1.3.5.2.2.4.1.1.0) Table 402. Data table used for plots. Data grouped by visit,Drug.Before.Diet. Showing only 200 first rows. Full dataset is also saved in a delimited text file (click to download and open e.g. in Excel) data/1.6.1.3.5.2.2.4.1.1.0-32371a4d63a.1.6.1.3.5.2.2.4.1.1.csv

.record.id visit Drug.Before.Diet feature Abundance
SM1 1 DrugBefore_YES Bacteroides 7.735e-01
SM10 3 DrugBefore_YES Bacteroides 2.364e-01
SM100 4 DrugBefore_YES Bacteroides 5.420e-01
SM11 2 DrugBefore_YES Bacteroides 8.578e-01
SM12 1 DrugBefore_YES Bacteroides 8.674e-01
SM13 1 DrugBefore_NO Bacteroides 4.295e-01
SM14 1 DrugBefore_NO Bacteroides 3.976e-02
SM16 4 DrugBefore_NO Bacteroides 3.890e-01
SM17 1 DrugBefore_YES Bacteroides 8.130e-01
SM18 2 DrugBefore_NO Bacteroides 6.537e-01
SM19 2 DrugBefore_NO Bacteroides 2.221e-01
SM2 1 DrugBefore_NO Bacteroides 8.611e-01
SM21 1 DrugBefore_NO Bacteroides 4.490e-01
SM22 1 DrugBefore_YES Bacteroides 5.831e-01
SM23 2 DrugBefore_YES Bacteroides 2.796e-01
SM24 1 DrugBefore_NO Bacteroides 1.435e-01
SM25 4 DrugBefore_NO Bacteroides 4.520e-01
SM29 3 DrugBefore_YES Bacteroides 9.002e-01
SM3 2 DrugBefore_YES Bacteroides 2.542e-01
SM30 4 DrugBefore_YES Bacteroides 6.581e-02
SM33 1 DrugBefore_YES Bacteroides 1.747e-01
SM36 4 DrugBefore_NO Bacteroides 3.219e-04
SM38 2 DrugBefore_YES Bacteroides 9.828e-01
SM39 1 DrugBefore_NO Bacteroides 4.095e-01
SM40 4 DrugBefore_NO Bacteroides 6.908e-01
SM41 1 DrugBefore_YES Bacteroides 5.037e-01
SM42 4 DrugBefore_NO Bacteroides 6.901e-01
SM43 4 DrugBefore_YES Bacteroides 6.589e-01
SM45 2 DrugBefore_NO Bacteroides 0.000e+00
SM49 1 DrugBefore_YES Bacteroides 9.292e-01
SM5 3 DrugBefore_YES Bacteroides 5.313e-01
SM50 3 DrugBefore_NO Bacteroides 0.000e+00
SM51 4 DrugBefore_YES Bacteroides 7.122e-01
SM52 1 DrugBefore_NO Bacteroides 8.105e-02
SM53 2 DrugBefore_YES Bacteroides 3.305e-01
SM54 3 DrugBefore_YES Bacteroides 6.239e-01
SM56 2 DrugBefore_YES Bacteroides 1.958e-02
SM57 1 DrugBefore_YES Bacteroides 8.679e-01
SM58 2 DrugBefore_NO Bacteroides 2.592e-02
SM59 3 DrugBefore_NO Bacteroides 5.206e-02
SM60 3 DrugBefore_YES Bacteroides 8.428e-01
SM62 1 DrugBefore_YES Bacteroides 9.643e-01
SM64 2 DrugBefore_YES Bacteroides 6.977e-01
SM65 3 DrugBefore_YES Bacteroides 3.711e-01
SM67 4 DrugBefore_YES Bacteroides 5.778e-01
SM68 4 DrugBefore_NO Bacteroides 1.440e-01
SM69 4 DrugBefore_YES Bacteroides 8.051e-01
SM71 3 DrugBefore_YES Bacteroides 8.388e-01
SM73 1 DrugBefore_NO Bacteroides 8.108e-01
SM75 3 DrugBefore_NO Bacteroides 2.377e-03
SM77 2 DrugBefore_YES Bacteroides 7.039e-01
SM79 2 DrugBefore_NO Bacteroides 1.173e-01
SM8 1 DrugBefore_NO Bacteroides 7.723e-01
SM82 4 DrugBefore_YES Bacteroides 8.624e-01
SM83 1 DrugBefore_YES Bacteroides 8.199e-01
SM84 1 DrugBefore_YES Bacteroides 2.885e-01
SM86 2 DrugBefore_YES Bacteroides 2.482e-03
SM87 1 DrugBefore_YES Bacteroides 5.438e-01
SM88 2 DrugBefore_YES Bacteroides 7.940e-01
SM9 2 DrugBefore_NO Bacteroides 6.096e-01
SM90 2 DrugBefore_NO Bacteroides 4.088e-01
SM91 3 DrugBefore_YES Bacteroides 6.525e-01
SM92 3 DrugBefore_NO Bacteroides 7.921e-01
SM93 1 DrugBefore_YES Bacteroides 6.404e-01
SM96 1 DrugBefore_NO Bacteroides 6.375e-01
SM98 3 DrugBefore_NO Bacteroides 2.848e-01
SM99 3 DrugBefore_NO Bacteroides 6.503e-01
SM1 1 DrugBefore_YES Prevotella 2.598e-04
SM10 3 DrugBefore_YES Prevotella 0.000e+00
SM100 4 DrugBefore_YES Prevotella 7.692e-05
SM11 2 DrugBefore_YES Prevotella 3.477e-04
SM12 1 DrugBefore_YES Prevotella 1.328e-04
SM13 1 DrugBefore_NO Prevotella 1.652e-02
SM14 1 DrugBefore_NO Prevotella 1.855e-02
SM16 4 DrugBefore_NO Prevotella 0.000e+00
SM17 1 DrugBefore_YES Prevotella 4.137e-04
SM18 2 DrugBefore_NO Prevotella 3.357e-04
SM19 2 DrugBefore_NO Prevotella 2.314e-03
SM2 1 DrugBefore_NO Prevotella 2.480e-04
SM21 1 DrugBefore_NO Prevotella 0.000e+00
SM22 1 DrugBefore_YES Prevotella 0.000e+00
SM23 2 DrugBefore_YES Prevotella 0.000e+00
SM24 1 DrugBefore_NO Prevotella 6.822e-01
SM25 4 DrugBefore_NO Prevotella 0.000e+00
SM29 3 DrugBefore_YES Prevotella 0.000e+00
SM3 2 DrugBefore_YES Prevotella 4.458e-02
SM30 4 DrugBefore_YES Prevotella 2.762e-03
SM33 1 DrugBefore_YES Prevotella 0.000e+00
SM36 4 DrugBefore_NO Prevotella 0.000e+00
SM38 2 DrugBefore_YES Prevotella 1.028e-04
SM39 1 DrugBefore_NO Prevotella 4.073e-01
SM40 4 DrugBefore_NO Prevotella 2.775e-04
SM41 1 DrugBefore_YES Prevotella 0.000e+00
SM42 4 DrugBefore_NO Prevotella 4.994e-04
SM43 4 DrugBefore_YES Prevotella 7.452e-05
SM45 2 DrugBefore_NO Prevotella 0.000e+00
SM49 1 DrugBefore_YES Prevotella 0.000e+00
SM5 3 DrugBefore_YES Prevotella 5.950e-02
SM50 3 DrugBefore_NO Prevotella 0.000e+00
SM51 4 DrugBefore_YES Prevotella 2.231e-04
SM52 1 DrugBefore_NO Prevotella 8.062e-03
SM53 2 DrugBefore_YES Prevotella 4.611e-01
SM54 3 DrugBefore_YES Prevotella 0.000e+00
SM56 2 DrugBefore_YES Prevotella 0.000e+00
SM57 1 DrugBefore_YES Prevotella 3.600e-04
SM58 2 DrugBefore_NO Prevotella 6.582e-01
SM59 3 DrugBefore_NO Prevotella 0.000e+00
SM60 3 DrugBefore_YES Prevotella 3.404e-04
SM62 1 DrugBefore_YES Prevotella 0.000e+00
SM64 2 DrugBefore_YES Prevotella 1.113e-04
SM65 3 DrugBefore_YES Prevotella 1.374e-04
SM67 4 DrugBefore_YES Prevotella 0.000e+00
SM68 4 DrugBefore_NO Prevotella 2.586e-02
SM69 4 DrugBefore_YES Prevotella 3.108e-04
SM71 3 DrugBefore_YES Prevotella 1.723e-03
SM73 1 DrugBefore_NO Prevotella 1.009e-04
SM75 3 DrugBefore_NO Prevotella 0.000e+00
SM77 2 DrugBefore_YES Prevotella 1.127e-04
SM79 2 DrugBefore_NO Prevotella 6.782e-01
SM8 1 DrugBefore_NO Prevotella 7.416e-04
SM82 4 DrugBefore_YES Prevotella 2.141e-04
SM83 1 DrugBefore_YES Prevotella 0.000e+00
SM84 1 DrugBefore_YES Prevotella 4.502e-01
SM86 2 DrugBefore_YES Prevotella 3.103e-04
SM87 1 DrugBefore_YES Prevotella 1.804e-01
SM88 2 DrugBefore_YES Prevotella 1.705e-04
SM9 2 DrugBefore_NO Prevotella 8.227e-04
SM90 2 DrugBefore_NO Prevotella 5.776e-03
SM91 3 DrugBefore_YES Prevotella 2.212e-04
SM92 3 DrugBefore_NO Prevotella 9.411e-02
SM93 1 DrugBefore_YES Prevotella 0.000e+00
SM96 1 DrugBefore_NO Prevotella 0.000e+00
SM98 3 DrugBefore_NO Prevotella 5.140e-01
SM99 3 DrugBefore_NO Prevotella 4.757e-04
SM1 1 DrugBefore_YES Unclassified_Lachnospiraceae 4.529e-02
SM10 3 DrugBefore_YES Unclassified_Lachnospiraceae 2.607e-01
SM100 4 DrugBefore_YES Unclassified_Lachnospiraceae 1.308e-01
SM11 2 DrugBefore_YES Unclassified_Lachnospiraceae 4.404e-03
SM12 1 DrugBefore_YES Unclassified_Lachnospiraceae 1.049e-02
SM13 1 DrugBefore_NO Unclassified_Lachnospiraceae 1.116e-02
SM14 1 DrugBefore_NO Unclassified_Lachnospiraceae 6.172e-02
SM16 4 DrugBefore_NO Unclassified_Lachnospiraceae 1.583e-01
SM17 1 DrugBefore_YES Unclassified_Lachnospiraceae 2.938e-02
SM18 2 DrugBefore_NO Unclassified_Lachnospiraceae 5.271e-02
SM19 2 DrugBefore_NO Unclassified_Lachnospiraceae 1.055e-01
SM2 1 DrugBefore_NO Unclassified_Lachnospiraceae 1.097e-02
SM21 1 DrugBefore_NO Unclassified_Lachnospiraceae 5.532e-02
SM22 1 DrugBefore_YES Unclassified_Lachnospiraceae 1.113e-01
SM23 2 DrugBefore_YES Unclassified_Lachnospiraceae 4.148e-04
SM24 1 DrugBefore_NO Unclassified_Lachnospiraceae 1.402e-02
SM25 4 DrugBefore_NO Unclassified_Lachnospiraceae 8.430e-02
SM29 3 DrugBefore_YES Unclassified_Lachnospiraceae 1.128e-02
SM3 2 DrugBefore_YES Unclassified_Lachnospiraceae 1.560e-01
SM30 4 DrugBefore_YES Unclassified_Lachnospiraceae 3.297e-01
SM33 1 DrugBefore_YES Unclassified_Lachnospiraceae 3.934e-03
SM36 4 DrugBefore_NO Unclassified_Lachnospiraceae 1.023e-01
SM38 2 DrugBefore_YES Unclassified_Lachnospiraceae 1.130e-03
SM39 1 DrugBefore_NO Unclassified_Lachnospiraceae 1.135e-02
SM40 4 DrugBefore_NO Unclassified_Lachnospiraceae 4.930e-02
SM41 1 DrugBefore_YES Unclassified_Lachnospiraceae 2.995e-02
SM42 4 DrugBefore_NO Unclassified_Lachnospiraceae 5.327e-02
SM43 4 DrugBefore_YES Unclassified_Lachnospiraceae 3.264e-02
SM45 2 DrugBefore_NO Unclassified_Lachnospiraceae 0.000e+00
SM49 1 DrugBefore_YES Unclassified_Lachnospiraceae 6.331e-03
SM5 3 DrugBefore_YES Unclassified_Lachnospiraceae 2.178e-02
SM50 3 DrugBefore_NO Unclassified_Lachnospiraceae 3.918e-02
SM51 4 DrugBefore_YES Unclassified_Lachnospiraceae 3.993e-02
SM52 1 DrugBefore_NO Unclassified_Lachnospiraceae 9.925e-02
SM53 2 DrugBefore_YES Unclassified_Lachnospiraceae 5.682e-02
SM54 3 DrugBefore_YES Unclassified_Lachnospiraceae 5.786e-02
SM56 2 DrugBefore_YES Unclassified_Lachnospiraceae 3.916e-02
SM57 1 DrugBefore_YES Unclassified_Lachnospiraceae 3.240e-03
SM58 2 DrugBefore_NO Unclassified_Lachnospiraceae 1.895e-02
SM59 3 DrugBefore_NO Unclassified_Lachnospiraceae 2.981e-01
SM60 3 DrugBefore_YES Unclassified_Lachnospiraceae 1.361e-02
SM62 1 DrugBefore_YES Unclassified_Lachnospiraceae 1.204e-03
SM64 2 DrugBefore_YES Unclassified_Lachnospiraceae 1.019e-02
SM65 3 DrugBefore_YES Unclassified_Lachnospiraceae 1.502e-01
SM67 4 DrugBefore_YES Unclassified_Lachnospiraceae 3.912e-02
SM68 4 DrugBefore_NO Unclassified_Lachnospiraceae 1.044e-01
SM69 4 DrugBefore_YES Unclassified_Lachnospiraceae 1.710e-03
SM71 3 DrugBefore_YES Unclassified_Lachnospiraceae 5.249e-03
SM73 1 DrugBefore_NO Unclassified_Lachnospiraceae 8.278e-03
SM75 3 DrugBefore_NO Unclassified_Lachnospiraceae 3.718e-01
SM77 2 DrugBefore_YES Unclassified_Lachnospiraceae 4.799e-02
SM79 2 DrugBefore_NO Unclassified_Lachnospiraceae 2.075e-02
SM8 1 DrugBefore_NO Unclassified_Lachnospiraceae 1.112e-02
SM82 4 DrugBefore_YES Unclassified_Lachnospiraceae 5.168e-03
SM83 1 DrugBefore_YES Unclassified_Lachnospiraceae 3.899e-02
SM84 1 DrugBefore_YES Unclassified_Lachnospiraceae 1.844e-03
SM86 2 DrugBefore_YES Unclassified_Lachnospiraceae 2.203e-01
SM87 1 DrugBefore_YES Unclassified_Lachnospiraceae 0.000e+00
SM88 2 DrugBefore_YES Unclassified_Lachnospiraceae 2.660e-02
SM9 2 DrugBefore_NO Unclassified_Lachnospiraceae 1.275e-02
SM90 2 DrugBefore_NO Unclassified_Lachnospiraceae 3.795e-02
SM91 3 DrugBefore_YES Unclassified_Lachnospiraceae 6.525e-02
SM92 3 DrugBefore_NO Unclassified_Lachnospiraceae 3.871e-02
SM93 1 DrugBefore_YES Unclassified_Lachnospiraceae 6.495e-02
SM96 1 DrugBefore_NO Unclassified_Lachnospiraceae 4.444e-02
SM98 3 DrugBefore_NO Unclassified_Lachnospiraceae 1.239e-02

(1.6.1.3.5.2.2.4.1.1.1) Widget 416. Dynamic Pivot Table link (drag and drop field names and pick averaging functions or plot types; click on fields or legend elements to filter values). Starting rendering is Stacked Bar Chart. Data grouped by visit,Drug.Before.Diet. Click to see HTML widget file in full window: ./1.6.1.3.5.2.2.4.1.1.1-32336c76fabDynamic.Pivot.Table.html

(1.6.1.3.5.2.2.4.1.1.1) Widget 417. Dynamic Pivot Table link (drag and drop field names and pick averaging functions or plot types; click on fields or legend elements to filter values). Starting rendering is Table Barchart. Data grouped by visit,Drug.Before.Diet. Click to see HTML widget file in full window: ./1.6.1.3.5.2.2.4.1.1.1-3237787a87aDynamic.Pivot.Table.html

(1.6.1.3.5.2.2.4.1.1.1) Table 403. Summary table. Data grouped by visit,Drug.Before.Diet. Showing only 200 first rows. Full dataset is also saved in a delimited text file (click to download and open e.g. in Excel) data/1.6.1.3.5.2.2.4.1.1.1-32327353ce5.1.6.1.3.5.2.2.4.1.1.csv

feature visit Drug.Before.Diet mean sd median incidence
Roseburia 1 DrugBefore_NO 7.028e-03 7.428e-03 3.183e-03 1.0000
Roseburia 1 DrugBefore_YES 3.915e-03 5.016e-03 2.110e-03 0.7692
Roseburia 2 DrugBefore_NO 1.860e-02 3.406e-02 3.861e-03 0.8571
Roseburia 2 DrugBefore_YES 1.514e-02 1.970e-02 6.342e-03 1.0000
Roseburia 3 DrugBefore_NO 1.395e-02 1.660e-02 9.751e-03 1.0000
Roseburia 3 DrugBefore_YES 1.537e-02 1.691e-02 1.115e-02 1.0000
Roseburia 4 DrugBefore_NO 5.491e-02 4.492e-02 5.431e-02 1.0000
Roseburia 4 DrugBefore_YES 2.036e-02 2.166e-02 2.208e-02 1.0000
Lachnospiracea_incertae_sedis 1 DrugBefore_NO 9.291e-03 8.958e-03 6.378e-03 1.0000
Lachnospiracea_incertae_sedis 1 DrugBefore_YES 1.085e-02 1.317e-02 3.240e-03 0.8462
Lachnospiracea_incertae_sedis 2 DrugBefore_NO 1.942e-02 1.950e-02 1.145e-02 0.8571
Lachnospiracea_incertae_sedis 2 DrugBefore_YES 4.535e-02 5.535e-02 2.253e-02 0.9000
Lachnospiracea_incertae_sedis 3 DrugBefore_NO 7.174e-02 1.013e-01 1.093e-02 1.0000
Lachnospiracea_incertae_sedis 3 DrugBefore_YES 4.177e-02 4.937e-02 2.248e-02 0.8750
Lachnospiracea_incertae_sedis 4 DrugBefore_NO 8.868e-02 6.950e-02 7.666e-02 1.0000
Lachnospiracea_incertae_sedis 4 DrugBefore_YES 2.672e-02 3.288e-02 1.450e-02 0.8571
Haemophilus 1 DrugBefore_NO 1.089e-03 2.532e-03 0.000e+00 0.4000
Haemophilus 1 DrugBefore_YES 1.341e-04 2.383e-04 0.000e+00 0.3077
Haemophilus 2 DrugBefore_NO 1.992e-03 2.366e-03 1.650e-03 0.7143
Haemophilus 2 DrugBefore_YES 8.641e-04 1.785e-03 4.263e-05 0.5000
Haemophilus 3 DrugBefore_NO 1.197e-02 2.109e-02 0.000e+00 0.3333
Haemophilus 3 DrugBefore_YES 3.237e-03 4.779e-03 1.166e-03 0.6250
Haemophilus 4 DrugBefore_NO 1.832e-02 3.967e-02 1.708e-03 0.8333
Haemophilus 4 DrugBefore_YES 2.501e-02 6.550e-02 2.231e-04 0.7143
Alistipes 1 DrugBefore_NO 5.269e-02 7.947e-02 1.928e-02 0.7000
Alistipes 1 DrugBefore_YES 1.696e-02 2.078e-02 9.784e-03 0.6923
Alistipes 2 DrugBefore_NO 1.185e-02 1.874e-02 6.851e-04 0.5714
Alistipes 2 DrugBefore_YES 2.759e-02 5.265e-02 0.000e+00 0.4000
Alistipes 3 DrugBefore_NO 8.739e-04 2.141e-03 0.000e+00 0.1667
Alistipes 3 DrugBefore_YES 1.056e-02 2.049e-02 1.516e-03 0.6250
Alistipes 4 DrugBefore_NO 4.068e-03 8.729e-03 4.160e-04 0.5000
Alistipes 4 DrugBefore_YES 9.648e-03 1.404e-02 2.660e-03 0.5714
Unclassified_Lachnospiraceae 1 DrugBefore_NO 3.276e-02 3.113e-02 1.269e-02 1.0000
Unclassified_Lachnospiraceae 1 DrugBefore_YES 2.669e-02 3.274e-02 1.049e-02 0.9231
Unclassified_Lachnospiraceae 2 DrugBefore_NO 3.552e-02 3.529e-02 2.075e-02 0.8571
Unclassified_Lachnospiraceae 2 DrugBefore_YES 5.630e-02 7.384e-02 3.288e-02 1.0000
Unclassified_Lachnospiraceae 3 DrugBefore_NO 1.344e-01 1.575e-01 4.278e-02 1.0000
Unclassified_Lachnospiraceae 3 DrugBefore_YES 7.323e-02 8.946e-02 3.982e-02 1.0000
Unclassified_Lachnospiraceae 4 DrugBefore_NO 9.198e-02 4.009e-02 9.333e-02 1.0000
Unclassified_Lachnospiraceae 4 DrugBefore_YES 8.273e-02 1.170e-01 3.912e-02 1.0000
Akkermansia 1 DrugBefore_NO 6.661e-03 1.204e-02 0.000e+00 0.4000
Akkermansia 1 DrugBefore_YES 1.355e-02 4.857e-02 0.000e+00 0.3077
Akkermansia 2 DrugBefore_NO 4.125e-04 1.091e-03 0.000e+00 0.1429
Akkermansia 2 DrugBefore_YES 3.747e-04 1.185e-03 0.000e+00 0.1000
Akkermansia 3 DrugBefore_NO 1.873e-04 4.587e-04 0.000e+00 0.1667
Akkermansia 3 DrugBefore_YES 8.617e-04 2.437e-03 0.000e+00 0.1250
Akkermansia 4 DrugBefore_NO 6.167e-05 1.510e-04 0.000e+00 0.1667
Akkermansia 4 DrugBefore_YES 0.000e+00 0.000e+00 0.000e+00 0.0000
Escherichia_Shigella 1 DrugBefore_NO 1.337e-02 4.052e-02 6.431e-05 0.5000
Escherichia_Shigella 1 DrugBefore_YES 1.466e-02 4.824e-02 0.000e+00 0.3077
Escherichia_Shigella 2 DrugBefore_NO 8.508e-04 2.001e-03 0.000e+00 0.4286
Escherichia_Shigella 2 DrugBefore_YES 1.239e-05 2.833e-05 0.000e+00 0.2000
Escherichia_Shigella 3 DrugBefore_NO 1.739e-03 1.694e-03 1.798e-03 0.6667
Escherichia_Shigella 3 DrugBefore_YES 2.818e-03 6.836e-03 3.157e-04 0.6250
Escherichia_Shigella 4 DrugBefore_NO 2.261e-04 3.197e-04 4.161e-05 0.5000
Escherichia_Shigella 4 DrugBefore_YES 1.381e-02 2.232e-02 1.590e-03 0.5714
Unclassified_Burkholderiales 1 DrugBefore_NO 1.633e-03 5.165e-03 0.000e+00 0.1000
Unclassified_Burkholderiales 1 DrugBefore_YES 1.378e-03 3.394e-03 0.000e+00 0.2308
Unclassified_Burkholderiales 2 DrugBefore_NO 0.000e+00 0.000e+00 0.000e+00 0.0000
Unclassified_Burkholderiales 2 DrugBefore_YES 5.590e-03 1.768e-02 0.000e+00 0.1000
Unclassified_Burkholderiales 3 DrugBefore_NO 0.000e+00 0.000e+00 0.000e+00 0.0000
Unclassified_Burkholderiales 3 DrugBefore_YES 9.216e-06 2.607e-05 0.000e+00 0.1250
Unclassified_Burkholderiales 4 DrugBefore_NO 4.161e-05 1.019e-04 0.000e+00 0.1667
Unclassified_Burkholderiales 4 DrugBefore_YES 0.000e+00 0.000e+00 0.000e+00 0.0000
Clostridium_IV 1 DrugBefore_NO 4.399e-03 7.693e-03 1.573e-03 0.9000
Clostridium_IV 1 DrugBefore_YES 5.740e-03 9.719e-03 1.461e-03 0.7692
Clostridium_IV 2 DrugBefore_NO 1.861e-03 3.965e-03 1.620e-04 0.5714
Clostridium_IV 2 DrugBefore_YES 1.862e-03 3.506e-03 7.252e-04 0.6000
Clostridium_IV 3 DrugBefore_NO 2.342e-03 5.281e-03 1.315e-04 0.5000
Clostridium_IV 3 DrugBefore_YES 1.453e-03 2.174e-03 4.609e-04 0.7500
Clostridium_IV 4 DrugBefore_NO 6.805e-03 1.504e-02 3.234e-04 0.6667
Clostridium_IV 4 DrugBefore_YES 1.882e-03 3.960e-03 2.231e-04 0.7143
Phascolarctobacterium 1 DrugBefore_NO 1.494e-03 4.343e-03 0.000e+00 0.4000
Phascolarctobacterium 1 DrugBefore_YES 2.272e-03 5.194e-03 0.000e+00 0.3846
Phascolarctobacterium 2 DrugBefore_NO 5.975e-04 1.255e-03 0.000e+00 0.2857
Phascolarctobacterium 2 DrugBefore_YES 8.464e-04 1.791e-03 0.000e+00 0.2000
Phascolarctobacterium 3 DrugBefore_NO 0.000e+00 0.000e+00 0.000e+00 0.0000
Phascolarctobacterium 3 DrugBefore_YES 2.780e-03 5.588e-03 0.000e+00 0.2500
Phascolarctobacterium 4 DrugBefore_NO 1.387e-05 3.398e-05 0.000e+00 0.1667
Phascolarctobacterium 4 DrugBefore_YES 4.695e-03 6.770e-03 0.000e+00 0.4286
Klebsiella 1 DrugBefore_NO 7.478e-04 2.154e-03 0.000e+00 0.3000
Klebsiella 1 DrugBefore_YES 8.292e-05 2.263e-04 0.000e+00 0.1538
Klebsiella 2 DrugBefore_NO 1.911e-04 3.585e-04 0.000e+00 0.2857
Klebsiella 2 DrugBefore_YES 1.625e-05 3.431e-05 0.000e+00 0.2000
Klebsiella 3 DrugBefore_NO 9.134e-03 2.219e-02 0.000e+00 0.3333
Klebsiella 3 DrugBefore_YES 0.000e+00 0.000e+00 0.000e+00 0.0000
Klebsiella 4 DrugBefore_NO 1.218e-03 1.963e-03 0.000e+00 0.3333
Klebsiella 4 DrugBefore_YES 1.171e-02 2.891e-02 2.308e-04 0.5714
Unclassified_Bacteria 1 DrugBefore_NO 1.480e-02 2.717e-02 4.448e-03 1.0000
Unclassified_Bacteria 1 DrugBefore_YES 3.807e-03 4.164e-03 2.257e-03 0.9231
Unclassified_Bacteria 2 DrugBefore_NO 2.186e-03 2.207e-03 1.388e-03 0.8571
Unclassified_Bacteria 2 DrugBefore_YES 2.145e-03 1.812e-03 2.054e-03 0.9000
Unclassified_Bacteria 3 DrugBefore_NO 5.270e-03 3.824e-03 3.444e-03 1.0000
Unclassified_Bacteria 3 DrugBefore_YES 1.982e-03 1.537e-03 1.345e-03 1.0000
Unclassified_Bacteria 4 DrugBefore_NO 4.114e-03 4.251e-03 2.007e-03 1.0000
Unclassified_Bacteria 4 DrugBefore_YES 5.219e-03 8.370e-03 1.399e-03 1.0000
Prevotella 1 DrugBefore_NO 1.134e-01 2.365e-01 4.402e-03 0.8000
Prevotella 1 DrugBefore_YES 4.860e-02 1.305e-01 0.000e+00 0.4615
Prevotella 2 DrugBefore_NO 1.922e-01 3.252e-01 2.314e-03 0.8571
Prevotella 2 DrugBefore_YES 5.068e-02 1.449e-01 1.416e-04 0.8000
Prevotella 3 DrugBefore_NO 1.014e-01 2.056e-01 2.378e-04 0.5000
Prevotella 3 DrugBefore_YES 7.740e-03 2.092e-02 1.793e-04 0.6250
Prevotella 4 DrugBefore_NO 4.440e-03 1.050e-02 1.387e-04 0.5000
Prevotella 4 DrugBefore_YES 5.231e-04 9.932e-04 2.141e-04 0.8571
Unclassified_Clostridiaceae_1 1 DrugBefore_NO 4.953e-04 8.802e-04 8.846e-05 0.6000
Unclassified_Clostridiaceae_1 1 DrugBefore_YES 1.058e-04 3.561e-04 0.000e+00 0.1538
Unclassified_Clostridiaceae_1 2 DrugBefore_NO 5.893e-05 1.559e-04 0.000e+00 0.1429
Unclassified_Clostridiaceae_1 2 DrugBefore_YES 9.575e-04 2.827e-03 3.596e-05 0.5000
Unclassified_Clostridiaceae_1 3 DrugBefore_NO 2.751e-02 4.998e-02 3.421e-03 0.8333
Unclassified_Clostridiaceae_1 3 DrugBefore_YES 2.662e-04 4.725e-04 0.000e+00 0.3750
Unclassified_Clostridiaceae_1 4 DrugBefore_NO 8.204e-03 1.716e-02 1.040e-03 0.8333
Unclassified_Clostridiaceae_1 4 DrugBefore_YES 2.134e-04 4.994e-04 0.000e+00 0.2857
Sutterella 1 DrugBefore_NO 5.495e-03 1.166e-02 1.302e-04 0.7000
Sutterella 1 DrugBefore_YES 7.355e-03 1.737e-02 0.000e+00 0.3846
Sutterella 2 DrugBefore_NO 9.702e-03 1.627e-02 0.000e+00 0.4286
Sutterella 2 DrugBefore_YES 5.365e-03 1.176e-02 0.000e+00 0.2000
Sutterella 3 DrugBefore_NO 6.242e-05 1.529e-04 0.000e+00 0.1667
Sutterella 3 DrugBefore_YES 8.784e-03 1.627e-02 0.000e+00 0.2500
Sutterella 4 DrugBefore_NO 1.555e-02 3.337e-02 3.219e-04 0.5000
Sutterella 4 DrugBefore_YES 5.578e-03 1.476e-02 0.000e+00 0.1429
Unclassified_Bacteroidales 1 DrugBefore_NO 3.923e-03 7.636e-03 1.341e-03 1.0000
Unclassified_Bacteroidales 1 DrugBefore_YES 8.234e-03 1.716e-02 3.015e-03 1.0000
Unclassified_Bacteroidales 2 DrugBefore_NO 1.853e-02 2.981e-02 4.538e-03 0.8571
Unclassified_Bacteroidales 2 DrugBefore_YES 1.919e-03 1.479e-03 1.639e-03 0.9000
Unclassified_Bacteroidales 3 DrugBefore_NO 2.033e-03 4.456e-03 1.873e-04 0.5000
Unclassified_Bacteroidales 3 DrugBefore_YES 3.376e-03 2.782e-03 2.559e-03 0.8750
Unclassified_Bacteroidales 4 DrugBefore_NO 3.144e-04 3.624e-04 2.497e-04 0.5000
Unclassified_Bacteroidales 4 DrugBefore_YES 2.734e-03 2.675e-03 2.008e-03 1.0000
Gemmiger 1 DrugBefore_NO 1.633e-03 2.276e-03 7.125e-04 0.6000
Gemmiger 1 DrugBefore_YES 1.928e-03 3.638e-03 1.941e-04 0.5385
Gemmiger 2 DrugBefore_NO 2.085e-03 4.800e-03 3.915e-04 0.7143
Gemmiger 2 DrugBefore_YES 3.214e-03 5.669e-03 2.445e-04 0.6000
Gemmiger 3 DrugBefore_NO 1.387e-04 3.398e-04 0.000e+00 0.1667
Gemmiger 3 DrugBefore_YES 1.023e-03 2.663e-03 0.000e+00 0.2500
Gemmiger 4 DrugBefore_NO 8.545e-04 1.534e-03 1.558e-04 0.5000
Gemmiger 4 DrugBefore_YES 1.675e-03 4.194e-03 0.000e+00 0.4286
Erysipelotrichaceae_incertae_sedis 1 DrugBefore_NO 4.282e-02 1.209e-01 1.055e-03 0.8000
Erysipelotrichaceae_incertae_sedis 1 DrugBefore_YES 2.576e-03 3.115e-03 1.373e-03 0.6923
Erysipelotrichaceae_incertae_sedis 2 DrugBefore_NO 1.497e-03 2.797e-03 1.957e-04 0.5714
Erysipelotrichaceae_incertae_sedis 2 DrugBefore_YES 1.907e-03 3.034e-03 5.660e-04 1.0000
Erysipelotrichaceae_incertae_sedis 3 DrugBefore_NO 1.465e-02 1.880e-02 6.028e-03 1.0000
Erysipelotrichaceae_incertae_sedis 3 DrugBefore_YES 5.662e-03 8.182e-03 2.557e-03 1.0000
Erysipelotrichaceae_incertae_sedis 4 DrugBefore_NO 3.076e-02 7.402e-02 2.127e-04 0.6667
Erysipelotrichaceae_incertae_sedis 4 DrugBefore_YES 1.908e-03 1.198e-03 2.231e-03 1.0000
Dorea 1 DrugBefore_NO 7.990e-03 1.330e-02 4.205e-03 1.0000
Dorea 1 DrugBefore_YES 2.561e-03 4.804e-03 3.600e-04 0.5385
Dorea 2 DrugBefore_NO 2.330e-03 2.582e-03 1.134e-03 0.7143
Dorea 2 DrugBefore_YES 8.397e-04 8.158e-04 6.217e-04 0.9000
Dorea 3 DrugBefore_NO 7.206e-03 9.943e-03 2.691e-03 1.0000
Dorea 3 DrugBefore_YES 5.144e-03 1.147e-02 7.050e-04 0.7500
Dorea 4 DrugBefore_NO 4.257e-03 8.174e-03 1.005e-03 1.0000
Dorea 4 DrugBefore_YES 1.735e-03 3.051e-03 4.706e-04 0.8571
Bifidobacterium 1 DrugBefore_NO 1.552e-03 3.211e-03 1.985e-04 0.7000
Bifidobacterium 1 DrugBefore_YES 1.974e-03 5.715e-03 3.015e-04 0.6154
Bifidobacterium 2 DrugBefore_NO 3.356e-04 6.091e-04 0.000e+00 0.4286
Bifidobacterium 2 DrugBefore_YES 9.663e-04 2.418e-03 6.165e-05 0.6000
Bifidobacterium 3 DrugBefore_NO 1.383e-03 3.177e-03 9.832e-05 0.5000
Bifidobacterium 3 DrugBefore_YES 5.377e-03 8.782e-03 9.066e-04 0.6250
Bifidobacterium 4 DrugBefore_NO 1.767e-03 3.919e-03 9.250e-05 0.5000
Bifidobacterium 4 DrugBefore_YES 3.710e-03 6.004e-03 5.198e-04 0.7143
Odoribacter 1 DrugBefore_NO 2.788e-03 5.944e-03 0.000e+00 0.4000
Odoribacter 1 DrugBefore_YES 1.264e-03 4.185e-03 0.000e+00 0.1538
Odoribacter 2 DrugBefore_NO 1.953e-03 3.336e-03 0.000e+00 0.2857
Odoribacter 2 DrugBefore_YES 2.535e-04 8.015e-04 0.000e+00 0.1000
Odoribacter 3 DrugBefore_NO 1.982e-05 4.855e-05 0.000e+00 0.1667
Odoribacter 3 DrugBefore_YES 2.396e-04 6.777e-04 0.000e+00 0.1250
Odoribacter 4 DrugBefore_NO 1.696e-03 2.691e-03 0.000e+00 0.3333
Odoribacter 4 DrugBefore_YES 8.304e-04 2.197e-03 0.000e+00 0.1429
Streptococcus 1 DrugBefore_NO 3.878e-03 6.983e-03 3.720e-04 0.8000
Streptococcus 1 DrugBefore_YES 7.915e-04 1.487e-03 9.707e-05 0.6154
Streptococcus 2 DrugBefore_NO 2.132e-03 3.764e-03 4.893e-04 0.7143
Streptococcus 2 DrugBefore_YES 1.486e-03 2.900e-03 1.195e-04 0.7000
Streptococcus 3 DrugBefore_NO 1.172e-02 2.468e-02 5.911e-04 0.8333
Streptococcus 3 DrugBefore_YES 3.963e-04 4.698e-04 2.973e-04 0.6250
Streptococcus 4 DrugBefore_NO 2.718e-03 3.719e-03 9.245e-04 1.0000
Streptococcus 4 DrugBefore_YES 7.435e-04 1.540e-03 2.231e-04 0.8571
Flavonifractor 1 DrugBefore_NO 2.369e-03 3.142e-03 1.163e-03 0.9000
Flavonifractor 1 DrugBefore_YES 1.604e-03 1.723e-03 1.536e-03 0.6923
Flavonifractor 2 DrugBefore_NO 1.677e-03 2.107e-03 9.718e-04 0.8571
Flavonifractor 2 DrugBefore_YES 1.820e-03 3.191e-03 4.513e-04 0.8000
Flavonifractor 3 DrugBefore_NO 3.875e-03 7.411e-03 1.284e-03 0.8333
Flavonifractor 3 DrugBefore_YES 1.056e-03 9.316e-04 9.611e-04 0.8750
Flavonifractor 4 DrugBefore_NO 3.977e-03 6.310e-03 1.594e-03 1.0000
Flavonifractor 4 DrugBefore_YES 8.560e-04 7.314e-04 4.893e-04 0.8571
Parabacteroides 1 DrugBefore_NO 1.024e-02 1.289e-02 2.166e-03 0.8000
Parabacteroides 1 DrugBefore_YES 5.820e-02 1.381e-01 7.199e-03 0.6923
Parabacteroides 2 DrugBefore_NO 2.816e-02 5.131e-02 1.370e-03 0.8571
Parabacteroides 2 DrugBefore_YES 7.576e-02 2.222e-01 5.432e-04 0.8000
Parabacteroides 3 DrugBefore_NO 8.124e-03 1.641e-02 0.000e+00 0.3333
Parabacteroides 3 DrugBefore_YES 5.231e-02 7.215e-02 1.782e-02 0.8750
Parabacteroides 4 DrugBefore_NO 2.621e-03 5.406e-03 1.849e-04 0.6667
Parabacteroides 4 DrugBefore_YES 6.228e-02 1.228e-01 2.231e-04 0.7143
Paraprevotella 1 DrugBefore_NO 5.752e-05 1.617e-04 0.000e+00 0.2000
Paraprevotella 1 DrugBefore_YES 2.024e-04 5.383e-04 0.000e+00 0.2308
Paraprevotella 2 DrugBefore_NO 2.531e-03 6.695e-03 0.000e+00 0.1429
Paraprevotella 2 DrugBefore_YES 2.634e-04 7.640e-04 0.000e+00 0.3000
Paraprevotella 3 DrugBefore_NO 3.236e-03 7.927e-03 0.000e+00 0.1667
Paraprevotella 3 DrugBefore_YES 1.869e-04 4.952e-04 0.000e+00 0.2500
Paraprevotella 4 DrugBefore_NO 0.000e+00 0.000e+00 0.000e+00 0.0000
Paraprevotella 4 DrugBefore_YES 6.883e-04 1.821e-03 0.000e+00 0.1429

(1.6.1.3.5.2.2.4.1.1.1) Figure 995. Abundance. Data grouped by visit,Drug.Before.Diet. Sorting order of features is Ranking by 'stabsel' method. bar_stacked plot. Image file: plots/32337b7646f.svg.

(1.6.1.3.5.2.2.4.1.1.1) Figure 996. Abundance. Data grouped by visit,Drug.Before.Diet. Sorting order of features is Ranking by 'stabsel' method. bar (sample mean) plot. Image file: plots/32362706ed9.svg.

(1.6.1.3.5.2.2.4.1.1.1) Figure 997. Abundance. Data grouped by visit,Drug.Before.Diet. Sorting order of features is Ranking by 'stabsel' method. violin plot. Image file: plots/32341509627.svg.

(1.6.1.3.5.2.2.4.1.1.1) Figure 998. Abundance. Data grouped by visit,Drug.Before.Diet. Sorting order of features is Ranking by 'stabsel' method. boxplot plot. Image file: plots/323410405f7.svg.

(1.6.1.3.5.2.2.4.1.2) Abundance. Plot is in flipped orientation, Y axis not scaled. Iterating over plot geometry

(1.6.1.3.5.2.2.4.1.2.1) Figure 999. Abundance. Data grouped by visit,Drug.Before.Diet. Sorting order of features is Ranking by 'stabsel' method. bar (sample mean) plot. Image file: plots/32328ea2c46.svg.

(1.6.1.3.5.2.2.4.1.2.1) Figure 1000. Abundance. Data grouped by visit,Drug.Before.Diet. Sorting order of features is Ranking by 'stabsel' method. violin plot. Image file: plots/32329716340.svg.

(1.6.1.3.5.2.2.4.1.2.1) Figure 1001. Abundance. Data grouped by visit,Drug.Before.Diet. Sorting order of features is Ranking by 'stabsel' method. boxplot plot. Image file: plots/32314b49b73.svg.

(1.6.1.3.5.2.2.4.2) dodged plots. Iterating over orientation and, optionally, scaling
(1.6.1.3.5.2.2.4.2.1) Abundance. Plot is in original orientation, Y axis SQRT scaled. Iterating over plot geometry

(1.6.1.3.5.2.2.4.2.1.1) Figure 1002. Abundance. Data grouped by visit,Drug.Before.Diet. Sorting order of features is Ranking by 'stabsel' method. bar (sample mean) plot. Image file: plots/32339e350cf.svg.

(1.6.1.3.5.2.2.4.2.1.1) Figure 1003. Abundance. Data grouped by visit,Drug.Before.Diet. Sorting order of features is Ranking by 'stabsel' method. violin plot. Image file: plots/3232eb743fd.svg.

(1.6.1.3.5.2.2.4.2.1.1) Figure 1004. Abundance. Data grouped by visit,Drug.Before.Diet. Sorting order of features is Ranking by 'stabsel' method. boxplot plot. Image file: plots/3234125600f.svg.

(1.6.1.3.5.2.2.4.2.2) Abundance. Plot is in flipped orientation, Y axis not scaled. Iterating over plot geometry

(1.6.1.3.5.2.2.4.2.2.1) Figure 1005. Abundance. Data grouped by visit,Drug.Before.Diet. Sorting order of features is Ranking by 'stabsel' method. bar (sample mean) plot. Image file: plots/323789e27ff.svg.

(1.6.1.3.5.2.2.4.2.2.1) Figure 1006. Abundance. Data grouped by visit,Drug.Before.Diet. Sorting order of features is Ranking by 'stabsel' method. violin plot. Image file: plots/3231b3b406.svg.

(1.6.1.3.5.2.2.4.2.2.1) Figure 1007. Abundance. Data grouped by visit,Drug.Before.Diet. Sorting order of features is Ranking by 'stabsel' method. boxplot plot. Image file: plots/323750bd36a.svg.

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